If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 0
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ), 'gf_id' => 'HOM05D000746', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000746' ), 'data_identifier' => 'HOM05D000746', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000746', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '780', 'num_species' => '99' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A01p05880' => 'bna', 'A02p19560' => 'bna', 'A03p25860' => 'bna', 'A03p34680' => 'bna', 'A03p61460' => 'bna', 'A03p68340' => 'bna', 'A04p00650' => 'bna', 'A04p34810' => 'bna', 'A05p00680' => 'bna', 'A05p00690' => 'bna', 'A06p11500' => 'bna', 'A06p36150' => 'bna', 'Aa31LG10G16210' => 'aar', 'Aa31LG11G4590' => 'aar', 'Aa31LG1G28470' => 'aar', 'Aa31LG2G17430' => 'aar', 'Aa31LG5G16990' => 'aar', 'Aa31LG7G200' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_117.3191' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_117.633' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_368.3248' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_369.342' => 'aag', 'Actinidia04415' => 'ach', 'Actinidia06376' => 'ach', 'Actinidia06377' => 'ach', 'Actinidia15806' => 'ach', 'Actinidia15807' => 'ach', 'Actinidia19100' => 'ach', 'Ah.01g011140' => 'amhyb', 'Ah.01g020910' => 'amhyb', 'Ah.01g020930' => 'amhyb', 'Ah.10g026030' => 'amhyb', 'Ah.11g045680' => 'amhyb', 'Ah.11g051540' => 'amhyb', 'AL1G27580' => 'aly', 'AL3G17470' => 'aly', 'AL4G46710' => 'aly', 'AL5G45020' => 'aly', 'AL6G37210' => 'aly', 'AL7G19300' => 'aly', 'Aqoxy196s002' => 'aox', 'Aqoxy2G02603' => 'aox', 'Aqoxy3G01055' => 'aox', 'Aqoxy3G02898' => 'aox', 'Aqoxy7G02023' => 'aox', 'arahy.Tifrunner.gnm1.ann1.14QJPY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2Q7BCI' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.32WHSZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.36UT5T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4APY5B' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4D56PA' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.54B16H' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.6E0KX6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.7S4VSW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.8L3F9C' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.954CHK' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A449FX' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.AWDE2L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.BA35D7' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.C0Y0G1' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.E6JEP5' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.H0Z6HL' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.HLLS2Z' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.JJP43A' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.KMF75D' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.L682N4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.M2PBL6' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.NY1VBY' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S6Z438' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.UR9976' => 'arhy', 'AT1G15460' => 'ath', 'AT1G74810' => 'ath', 'AT2G47160' => 'ath', 'AT3G06450' => 'ath', 'AT3G62270' => 'ath', 'AT4G32510' => 'ath', 'AT5G25430' => 'ath', 'ATR0693G175' => 'atr', 'ATR0716G075' => 'atr', 'ATR1091G012' => 'atr', 'Atru.chr1.3148' => 'acertr', 'Atru.chr1.3149' => 'acertr', 'Atru.chr1.3150' => 'acertr', 'Atru.chr4.3115' => 'acertr', 'Atru.chr5.922' => 'acertr', 'Atru.chr7.1242' => 'acertr', 'Atru.chr7.2366' => 'acertr', 'Atru.chr9.2486' => 'acertr', 'AUR62006474' => 'cqu', 'AUR62008201' => 'cqu', 'AUR62011578' => 'cqu', 'AUR62011582' => 'cqu', 'AUR62011583' => 'cqu', 'AUR62011745' => 'cqu', 'AUR62016394' => 'cqu', 'AUR62016396' => 'cqu', 'AUR62024582' => 'cqu', 'AUR62024585' => 'cqu', 'AUR62024588' => 'cqu', 'AUR62030954' => 'cqu', 'AUR62041839' => 'cqu', 'AUR62043810' => 'cqu', 'AUR62044042' => 'cqu', 'AUR62044043' => 'cqu', 'BcaB01g03180' => 'bca', 'BcaB02g08115' => 'bca', 'BcaB02g08799' => 'bca', 'BcaB05g24871' => 'bca', 'BcaB06g29462' => 'bca', 'BcaC01g05044' => 'bca', 'BcaC02g06960' => 'bca', 'BcaC02g10293' => 'bca', 'BcaC02g12591' => 'bca', 'BcaC02g12592' => 'bca', 'BcaC03g15451' => 'bca', 'BcaC03g15527' => 'bca', 'BcaC09g52040' => 'bca', 'BcaNung02266' => 'bca', 'BcaNung03222' => 'bca', 'BcaNung03594' => 'bca', 'BcaNung03947' => 'bca', 'BcaNung04515' => 'bca', 'BcaNung05993' => 'bca', 'BcaNung05994' => 'bca', 'BolC1t00644H' => 'bol', 'BolC2t09245H' => 'bol', 'BolC3t15433H' => 'bol', 'BolC3t16496H' => 'bol', 'BolC4t21709H' => 'bol', 'BolC4t21710H' => 'bol', 'BolC4t24592H' => 'bol', 'BolC4t28746H' => 'bol', 'BolC5t30099H' => 'bol', 'BolC7t44770H' => 'bol', 'BolC7t46371H' => 'bol', 'BraA01t00555Z' => 'bra', 'BraA02t06993Z' => 'bra', 'BraA03t11802Z' => 'bra', 'BraA03t12646Z' => 'bra', 'BraA03t15191Z' => 'bra', 'BraA04t15784Z' => 'bra', 'BraA05t19066Z' => 'bra', 'BraA06t24327Z' => 'bra', 'BraA06t26537Z' => 'bra', 'BraSC79t46672Z' => 'bra', 'C01p06500' => 'bna', 'C02p32100' => 'bna', 'C03p30810' => 'bna', 'C03p42150' => 'bna', 'C04p00800' => 'bna', 'C04p00810' => 'bna', 'C04p00820' => 'bna', 'C04p30730' => 'bna', 'C04p72580' => 'bna', 'C05p13630' => 'bna', 'C07p42430' => 'bna', 'C07p59240' => 'bna', 'CAN.G100.13' => 'can', 'CAN.G100.14' => 'can', 'CAN.G395.38' => 'can', 'CAN.G438.87' => 'can', 'CAN.G628.83' => 'can', 'CAN.G64.17' => 'can', 'CAN.G98.13' => 'can', 'CANSAT25G1569' => 'cansat', 'CANSAT56G4118' => 'cansat', 'CANSAT78G0513' => 'cansat', 'CANSAT80G1779' => 'cansat', 'CARHR016010' => 'chi', 'CARHR080990' => 'chi', 'CARHR142550' => 'chi', 'CARHR171320' => 'chi', 'CARHR172600' => 'chi', 'CARHR172610' => 'chi', 'CARHR188010' => 'chi', 'CARHR240430' => 'chi', 'Carub.0001s1525' => 'cru', 'Carub.0002s2159' => 'cru', 'Carub.0003s0590' => 'cru', 'Carub.0004s2989' => 'cru', 'Carub.0005s2899' => 'cru', 'Carub.0006s2328' => 'cru', 'Carub.0007s0807' => 'cru', 'Ca_00939_v3' => 'car', 'Ca_01090_v3' => 'car', 'Ca_09232_v3' => 'car', 'Ca_12926_v3' => 'car', 'Ca_14223_v3' => 'car', 'Ca_15714_v3' => 'car', 'Ca_16169_v3' => 'car', 'CBR_g23541' => 'cbr', 'CBR_g66734' => 'cbr', 'Cc04_g14210' => 'ccan', 'Cc11_g01710' => 'ccan', 'CDE04G1182' => 'cde', 'CDE06G1211' => 'cde', 'CDE11G0097' => 'cde', 'Cfa002024' => 'cfa', 'Cfa004865' => 'cfa', 'Cfa013187' => 'cfa', 'Cfa015705' => 'cfa', 'Cfa019142' => 'cfa', 'Cfa025825' => 'cfa', 'Ciclev10004419m.g' => 'ccl', 'Ciclev10010398m.g' => 'ccl', 'Ciclev10019060m.g' => 'ccl', 'Ciclev10019073m.g' => 'ccl', 'Ciclev10025159m.g' => 'ccl', 'Ciclev10027318m.g' => 'ccl', 'CiPaw.01G243400' => 'cil', 'CiPaw.02G071500' => 'cil', 'CiPaw.07G121900' => 'cil', 'CiPaw.07G220100' => 'cil', 'CiPaw.08G085400' => 'cil', 'CiPaw.11G025400' => 'cil', 'CiPaw.12G027000' => 'cil', 'ClCG01G005060' => 'cla', 'ClCG01G013190' => 'cla', 'ClCG07G012870' => 'cla', 'ClCG08G013090' => 'cla', 'ClCG10G011700' => 'cla', 'COL.COLO4_12872' => 'col', 'COL.COLO4_23175' => 'col', 'COL.COLO4_23992' => 'col', 'COL.COLO4_30056' => 'col', 'COL.COLO4_34534' => 'col', 'Cpa.g.sc10.202' => 'cpa', 'Cpa.g.sc146.51' => 'cpa', 'Cpa.g.sc334.2' => 'cpa', 'Cpa.g.sc67.90' => 'cpa', 'Cpa.g.sc76.41' => 'cpa', 'Cpa.g.sc91.37' => 'cpa', 'Cre10.g443900' => 'cre', 'CsaV3_1G008550' => 'csa', 'CsaV3_2G031820' => 'csa', 'CsaV3_3G026630' => 'csa', 'CsaV3_3G031650' => 'csa', 'CSS0000243' => 'camsi', 'CSS0001353' => 'camsi', 'CSS0001741' => 'camsi', 'CSS0002119' => 'camsi', 'CSS0003683' => 'camsi', 'CSS0004384' => 'camsi', 'CSS0010432' => 'camsi', 'CSS0012759' => 'camsi', 'CSS0022342' => 'camsi', 'CSS0026101' => 'camsi', 'CSS0028843' => 'camsi', 'CSS0033646' => 'camsi', 'DCAR_002534' => 'dca', 'DCAR_002919' => 'dca', 'DCAR_003050' => 'dca', 'DCAR_009217' => 'dca', 'DCAR_025472' => 'dca', 'DCAR_025473' => 'dca', 'DCAR_026141' => 'dca', 'DCAR_029060' => 'dca', 'DCAR_030434' => 'dca', 'DCAR_031329' => 'dca', 'Dinv11607' => 'din', 'Dinv12108' => 'din', 'Dinv15616' => 'din', 'Dinv20645' => 'din', 'Dinv38084' => 'din', 'Dinv38579' => 'din', 'Duzib138G1779' => 'dzi', 'Duzib150G1263' => 'dzi', 'Duzib151G0065' => 'dzi', 'Duzib160G0059' => 'dzi', 'Duzib187G1924' => 'dzi', 'Duzib205G1186' => 'dzi', 'Duzib212G0640' => 'dzi', 'Duzib235G0241' => 'dzi', 'ECA232G3167' => 'eca', 'ECA232G4375' => 'eca', 'ECA232G4782' => 'eca', 'ECA246G0080' => 'eca', 'ECA246G0228' => 'eca', 'ECA247G2413' => 'eca', 'ECA247G2829' => 'eca', 'ECA248G1392' => 'eca', 'EL10Ac2g02577' => 'bvu', 'EL10Ac5g10738' => 'bvu', 'EL10Ac9g21944' => 'bvu', 'EL10Ac9g21956' => 'bvu', 'EL10Ac9g21957' => 'bvu', 'EL10Ac9g21958' => 'bvu', 'EL10As5g23593' => 'bvu', 'Eucgr.B00302' => 'egr', 'Eucgr.C02816' => 'egr', 'Eucgr.C04162' => 'egr', 'Eucgr.H00896' => 'egr', 'Eucgr.H04094' => 'egr', 'Eucgr.J03035' => 'egr', 'FAN02G4044' => 'fan', 'FAN04G2614' => 'fan', 'FAN05G4046' => 'fan', 'FAN07G2963' => 'fan', 'FAN08G1100' => 'fan', 'FAN09G1068' => 'fan', 'FAN09G1594' => 'fan', 'FAN12G0950' => 'fan', 'FAN13G0078' => 'fan', 'FAN14G3424' => 'fan', 'FAN15G2688' => 'fan', 'FAN15G3763' => 'fan', 'FAN18G0839' => 'fan', 'FAN18G1731' => 'fan', 'FAN19G3084' => 'fan', 'FAN20G0967' => 'fan', 'FAN23G1630' => 'fan', 'FAN23G2827' => 'fan', 'FAN23G2949' => 'fan', 'FAN24G1667' => 'fan', 'FAN25G0481' => 'fan', 'FAN26G1750' => 'fan', 'FAN27G1003' => 'fan', 'FAN28G2471' => 'fan', 'FvH4_1g26620' => 'fve', 'FvH4_2g29710' => 'fve', 'FvH4_4g20851' => 'fve', 'FvH4_4g20852' => 'fve', 'FvH4_4g21020' => 'fve', 'FvH4_5g05400' => 'fve', 'FvH4_6g30530' => 'fve', 'Glyma.01G055700' => 'gma', 'Glyma.03G222300' => 'gma', 'Glyma.04G069500' => 'gma', 'Glyma.04G184000' => 'gma', 'Glyma.05G038300' => 'gma', 'Glyma.06G071200' => 'gma', 'Glyma.06G181900' => 'gma', 'Glyma.09G031400' => 'gma', 'Glyma.13G362550' => 'gma', 'Glyma.13G362600' => 'gma', 'Glyma.15G011200' => 'gma', 'Glyma.15G136466' => 'gma', 'Glyma.15G136532' => 'gma', 'Glyma.17G088800' => 'gma', 'Glyma.17G207700' => 'gma', 'Glyma.19G219500' => 'gma', 'Gohir.A02G086200' => 'ghi', 'Gohir.A03G096400' => 'ghi', 'Gohir.A05G009500' => 'ghi', 'Gohir.A06G187400' => 'ghi', 'Gohir.A06G191500' => 'ghi', 'Gohir.A08G236900' => 'ghi', 'Gohir.A09G241800' => 'ghi', 'Gohir.A10G176500' => 'ghi', 'Gohir.A11G001000' => 'ghi', 'Gohir.A12G122300' => 'ghi', 'Gohir.D02G062400' => 'ghi', 'Gohir.D02G117700' => 'ghi', 'Gohir.D05G010200' => 'ghi', 'Gohir.D05G270840' => 'ghi', 'Gohir.D05G270880' => 'ghi', 'Gohir.D06G193600' => 'ghi', 'Gohir.D06G199900' => 'ghi', 'Gohir.D08G142100' => 'ghi', 'Gohir.D08G257500' => 'ghi', 'Gohir.D09G242500' => 'ghi', 'Gohir.D10G183200' => 'ghi', 'Gohir.D10G183301' => 'ghi', 'Gohir.D11G000600' => 'ghi', 'Gohir.D12G126000' => 'ghi', 'Gorai.004G146300' => 'gra', 'Gorai.004G274500' => 'gra', 'Gorai.005G070200' => 'gra', 'Gorai.005G135900' => 'gra', 'Gorai.006G266200' => 'gra', 'Gorai.007G001500' => 'gra', 'Gorai.008G137000' => 'gra', 'Gorai.009G010600' => 'gra', 'Gorai.009G283500' => 'gra', 'Gorai.009G283700' => 'gra', 'Gorai.010G227500' => 'gra', 'Gorai.010G232900' => 'gra', 'Gorai.011G205300' => 'gra', 'Gorai.011G205400' => 'gra', 'GSVIVG01007733001' => 'vvi', 'GSVIVG01015478001' => 'vvi', 'GSVIVG01017223001' => 'vvi', 'GSVIVG01017647001' => 'vvi', 'GSVIVG01028186001' => 'vvi', 'GSVIVG01035800001' => 'vvi', 'HanXRQChr01g0031061' => 'han', 'HanXRQChr03g0063521' => 'han', 'HanXRQChr04g0096791' => 'han', 'HanXRQChr05g0139631' => 'han', 'HanXRQChr05g0149581' => 'han', 'HanXRQChr05g0156271' => 'han', 'HanXRQChr07g0188121' => 'han', 'HanXRQChr08g0217171' => 'han', 'HanXRQChr09g0272131' => 'han', 'HanXRQChr09g0274871' => 'han', 'HanXRQChr09g0274881' => 'han', 'HanXRQChr10g0285571' => 'han', 'HanXRQChr13g0404951' => 'han', 'HanXRQChr13g0410921' => 'han', 'Haze_00813' => 'cav', 'Haze_05105' => 'cav', 'Haze_07508' => 'cav', 'Haze_16502' => 'cav', 'Haze_21580' => 'cav', 'Hma1.2p1_0000F.1_g000860' => 'hma', 'Hma1.2p1_0515F.1_g170320' => 'hma', 'Hma1.2p1_0965F.1_g242210' => 'hma', 'HPP92_001191' => 'vpl', 'HPP92_001220' => 'vpl', 'HPP92_001221' => 'vpl', 'HPP92_008174' => 'vpl', 'HPP92_010877' => 'vpl', 'HPP92_017026' => 'vpl', 'HPP92_024115' => 'vpl', 'Hund00563' => 'sun', 'Hund09443' => 'sun', 'Hund09669' => 'sun', 'Lalb_Chr04g0260081' => 'lal', 'Lalb_Chr04g0260091' => 'lal', 'Lalb_Chr11g0063881' => 'lal', 'Lalb_Chr11g0071431' => 'lal', 'Lalb_Chr14g0373631' => 'lal', 'Lalb_Chr15g0077951' => 'lal', 'Lalb_Chr18g0058431' => 'lal', 'Lalb_Chr20g0120321' => 'lal', 'Lalb_Chr21g0314781' => 'lal', 'Lalb_Chr21g0314791' => 'lal', 'Lalb_Chr22g0351051' => 'lal', 'Lalb_Chr23g0272361' => 'lal', 'Lalb_Chr23g0272371' => 'lal', 'Lalb_Chr23g0273251' => 'lal', 'Lj1C12G1' => 'lonja', 'Lj1g0000894' => 'lja', 'Lj1g0002158' => 'lja', 'Lj1g0013058' => 'lja', 'Lj3g0012681' => 'lja', 'Lj3g0027086' => 'lja', 'Lj6g0005814' => 'lja', 'Lj6g0025355' => 'lja', 'Lj7A635G38' => 'lonja', 'Lj7A635T41' => 'lonja', 'Lj7A717G54' => 'lonja', 'Lj9A447T35' => 'lonja', 'Lsat_1_v5_gn_1_33641' => 'lsa', 'Lsat_1_v5_gn_1_42001' => 'lsa', 'Lsat_1_v5_gn_2_95441' => 'lsa', 'Lsat_1_v5_gn_3_101421' => 'lsa', 'Lsat_1_v5_gn_3_39861' => 'lsa', 'Lsat_1_v5_gn_3_39881' => 'lsa', 'Lsat_1_v5_gn_4_104681' => 'lsa', 'Lsat_1_v5_gn_4_151040' => 'lsa', 'Lsat_1_v5_gn_4_31700' => 'lsa', 'Lsat_1_v5_gn_4_75041' => 'lsa', 'Lsat_1_v5_gn_5_14880' => 'lsa', 'Lsat_1_v5_gn_5_32220' => 'lsa', 'Lsat_1_v5_gn_7_64180' => 'lsa', 'Lsat_1_v5_gn_7_97200' => 'lsa', 'Lsat_1_v5_gn_9_19800' => 'lsa', 'Lsat_1_v5_gn_9_19820' => 'lsa', 'Lsat_1_v5_gn_9_7340' => 'lsa', 'Manes.01G232000' => 'mes', 'Manes.03G017800' => 'mes', 'Manes.03G210100' => 'mes', 'Manes.06G005700' => 'mes', 'Manes.06G105600' => 'mes', 'Manes.11G048700' => 'mes', 'Manes.11G049055' => 'mes', 'Manes.14G065000' => 'mes', 'Manes.16G118700' => 'mes', 'Mapoly0052s0055' => 'mpo', 'Mapoly0066s0097' => 'mpo', 'MBI01_g34142_MAGBIO' => 'mbi', 'MBI04_g00942_MAGBIO' => 'mbi', 'MBI04_g29846_MAGBIO' => 'mbi', 'MBI06_g27706_MAGBIO' => 'mbi', 'MBI16_g30836_MAGBIO' => 'mbi', 'MBI18_g09660_MAGBIO' => 'mbi', 'MBI19_g32699_MAGBIO' => 'mbi', 'MCO02G086' => 'mco', 'MCO03G529' => 'mco', 'MCO09G321' => 'mco', 'MCO09G432' => 'mco', 'MCO09G647' => 'mco', 'MCO11G753' => 'mco', 'MD06G1173100' => 'mdo', 'MD08G1142700' => 'mdo', 'MD09G1219100' => 'mdo', 'MD09G1287700' => 'mdo', 'MD13G1146200' => 'mdo', 'MD13G1146400' => 'mdo', 'MD14G1179400' => 'mdo', 'MD15G1119200' => 'mdo', 'MD16G1140300' => 'mdo', 'MD17G1202200' => 'mdo', 'MD17G1279900' => 'mdo', 'Medtr0366s0020' => 'mtr', 'Medtr0459s0020' => 'mtr', 'Medtr1g011840' => 'mtr', 'Medtr2g032690' => 'mtr', 'Medtr3g077670' => 'mtr', 'Medtr3g107730' => 'mtr', 'Medtr7g110000' => 'mtr', 'MELO3C002269.2' => 'cme', 'MELO3C011232.2' => 'cme', 'MELO3C012917.2' => 'cme', 'MELO3C012936.2' => 'cme', 'Migut.A00307' => 'egut', 'Migut.D00039' => 'egut', 'Migut.E01483' => 'egut', 'Migut.O00089' => 'egut', 'MSTRG.1641' => 'ama', 'MSTRG.18075' => 'ama', 'MSTRG.23135' => 'ama', 'MSTRG.9441' => 'ama', 'Nitab4.5_0000003g0620' => 'nta', 'Nitab4.5_0000095g0150' => 'nta', 'Nitab4.5_0000151g0280' => 'nta', 'Nitab4.5_0000222g0200' => 'nta', 'Nitab4.5_0000410g0420' => 'nta', 'Nitab4.5_0000514g0160' => 'nta', 'Nitab4.5_0000671g0200' => 'nta', 'Nitab4.5_0001013g0010' => 'nta', 'Nitab4.5_0002403g0070' => 'nta', 'Nitab4.5_0002896g0020' => 'nta', 'Nitab4.5_0003813g0030' => 'nta', 'Nitab4.5_0004795g0010' => 'nta', 'Nitab4.5_0005786g0030' => 'nta', 'Nn1g08313' => 'nnu', 'Nn1g08314' => 'nnu', 'Nn1g08338' => 'nnu', 'Nn2g11922' => 'nnu', 'Nn2g11923' => 'nnu', 'Nn3g16834' => 'nnu', 'Nn3g21849' => 'nnu', 'Nn4g22731' => 'nnu', 'Nn4g25442' => 'nnu', 'Nn5g28212' => 'nnu', 'Nn8g39355' => 'nnu', 'Nn8g40852' => 'nnu', 'Oeu009098.1' => 'oeu', 'Oeu014663.1' => 'oeu', 'Oeu016396.1' => 'oeu', 'Oeu020093.1' => 'oeu', 'Oeu020522.2' => 'oeu', 'Oeu030199.1' => 'oeu', 'Oeu032499.2' => 'oeu', 'Oeu045198.1' => 'oeu', 'Oeu052302.1' => 'oeu', 'Oeu057352.1' => 'oeu', 'Os01g0175600' => 'osa', 'Os01g0175700' => 'osa', 'Os05g0176800' => 'osa', 'Os12g0566000' => 'osa', 'Peaxi162Scf00009g00024' => 'pax', 'Peaxi162Scf00015g00444' => 'pax', 'Peaxi162Scf00126g01324' => 'pax', 'Peaxi162Scf00161g00089' => 'pax', 'Peaxi162Scf00161g00913' => 'pax', 'Peaxi162Scf00689g00221' => 'pax', 'Peaxi162Scf00770g00042' => 'pax', 'PGR004G0135' => 'pgr', 'PGR031G3231' => 'pgr', 'PGR031G3554' => 'pgr', 'PGR031G3677' => 'pgr', 'PGR031G3894' => 'pgr', 'PGR044G1261' => 'pgr', 'PGR083G1039' => 'pgr', 'PGR083G2242' => 'pgr', 'PGR102G2399' => 'pgr', 'PGSC0003DMG400005214' => 'stu', 'PGSC0003DMG400005695' => 'stu', 'PGSC0003DMG400027088' => 'stu', 'PGSC0003DMG400028546' => 'stu', 'PGSC0003DMG400029090' => 'stu', 'PGSC0003DMG402017902' => 'stu', 'Phvul.001G053300' => 'pvu', 'Phvul.001G215700' => 'pvu', 'Phvul.003G201100' => 'pvu', 'Phvul.005G174400' => 'pvu', 'Phvul.006G121500' => 'pvu', 'Phvul.009G095800' => 'pvu', 'Phvul.009G178000' => 'pvu', 'Potri.001G174500' => 'ptr', 'Potri.002G191000' => 'ptr', 'Potri.003G059700' => 'ptr', 'Potri.006G154700' => 'ptr', 'Potri.006G249800' => 'ptr', 'Potri.008G100300' => 'ptr', 'Potri.012G081800' => 'ptr', 'Potri.014G116000' => 'ptr', 'Potri.015G077600' => 'ptr', 'Potri.018G031700' => 'ptr', 'Pp3c14_8980' => 'ppa', 'Pp3c16_18150' => 'ppa', 'Pp3c1_8580' => 'ppa', 'PRCOL_00000508' => 'pco', 'Prupe.1G109900' => 'ppe', 'Prupe.1G472500' => 'ppe', 'Prupe.3G005600' => 'ppe', 'Prupe.3G077900' => 'ppe', 'Prupe.5G172600' => 'ppe', 'Psat0s7003g0080' => 'psa', 'Psat0ss3962g0120' => 'psa', 'Psat0ss3962g0160' => 'psa', 'Psat1g071760' => 'psa', 'Psat1g163360' => 'psa', 'Psat3g012160' => 'psa', 'Psat3g018880' => 'psa', 'Psat5g027360' => 'psa', 'Psat5g300760' => 'psa', 'Psat6g030000' => 'psa', 'Psat7g254880' => 'psa', 'PSO017G2849' => 'pso', 'PSO063G6736' => 'pso', 'PSO170G1756' => 'pso', 'PSO210G3454' => 'pso', 'PSO210G4943' => 'pso', 'PSO455G0139' => 'pso', 'PSO478G3080' => 'pso', 'PSO566G0057' => 'pso', 'PSO761G0212' => 'pso', 'PSO832G2829' => 'pso', 'QL02p023191' => 'qlo', 'QL02p087186' => 'qlo', 'QL05p027183' => 'qlo', 'QL05p027257' => 'qlo', 'QL05p027279' => 'qlo', 'QL05p027312' => 'qlo', 'QL05p027365' => 'qlo', 'QL06p013613' => 'qlo', 'QL10p010307' => 'qlo', 'QL10p011443' => 'qlo', 'QL12p033918' => 'qlo', 'RcHm_v2.0_Chr2g0136951' => 'rch', 'RcHm_v2.0_Chr3g0486761' => 'rch', 'RcHm_v2.0_Chr4g0426551' => 'rch', 'RcHm_v2.0_Chr6g0298721' => 'rch', 'RcHm_v2.0_Chr7g0193431' => 'rch', 'Rhsim02G0193700' => 'rsi', 'Rhsim12G0164900' => 'rsi', 'Rhsim13G0001800' => 'rsi', 'Sabra02G0164600' => 'sbr', 'Sabra03G0034200' => 'sbr', 'Sabra08G0075900' => 'sbr', 'Sabra14G0086100' => 'sbr', 'Sabra18G0032700' => 'sbr', 'SalBow4G2961' => 'sbo', 'SalBow5G1289' => 'sbo', 'SalBow6G2444' => 'sbo', 'SalBow8G1531' => 'sbo', 'SalBow8G1636' => 'sbo', 'Sc10g0005530' => 'sci', 'Sc10g0007090' => 'sci', 'Sc12g0005280' => 'sci', 'Sc12g0008920' => 'sci', 'Sc17g0000230' => 'sci', 'Sed0004630' => 'sed', 'Sed0004868' => 'sed', 'Sed0007133' => 'sed', 'Sed0007663' => 'sed', 'Sed0013509' => 'sed', 'Sed0021778' => 'sed', 'Sed0022008' => 'sed', 'Sed0024677' => 'sed', 'SEGI_03243' => 'sgi', 'SEGI_07231' => 'sgi', 'SEGI_08263' => 'sgi', 'SEGI_09556' => 'sgi', 'SEGI_09972' => 'sgi', 'SEGI_10861' => 'sgi', 'SEGI_11163' => 'sgi', 'SEGI_22258' => 'sgi', 'SEGI_23837' => 'sgi', 'SEGI_24752' => 'sgi', 'SEGI_26683' => 'sgi', 'SEGI_31040' => 'sgi', 'SEGI_31379' => 'sgi', 'SEGI_32134' => 'sgi', 'SEGI_33531' => 'sgi', 'SEGI_34905' => 'sgi', 'SEGI_38656' => 'sgi', 'SEGI_38689' => 'sgi', 'SGA_v2.0_scaffold169G38621' => 'sas', 'SGA_v2.0_scaffold18G08280' => 'sas', 'SGA_v2.0_scaffold4G02192' => 'sas', 'SGA_v2.0_scaffold80G25707' => 'sas', 'SGA_v2.0_scaffold90G27905' => 'sas', 'SMO119G0088' => 'smo', 'SMO163G0012' => 'smo', 'SMO361G0703' => 'smo', 'Solyc01g057770.3' => 'sly', 'Solyc01g079150.4' => 'sly', 'Solyc03g120020.4' => 'sly', 'Solyc06g067900.3' => 'sly', 'Solyc06g071500.3' => 'sly', 'Solyc08g066960.3' => 'sly', 'Sopen01g023020' => 'spe', 'Sopen01g030920' => 'spe', 'Sopen03g038900' => 'spe', 'Sopen06g025180' => 'spe', 'Sopen06g027790' => 'spe', 'Sopen08g020920' => 'spe', 'Sp1g13820' => 'spa', 'Sp2g22080' => 'spa', 'Sp3g05390' => 'spa', 'Sp4g29140' => 'spa', 'Sp5g01110' => 'spa', 'Sp5g29940' => 'spa', 'Sp7g30280' => 'spa', 'TAR362G0546' => 'tar', 'TAR374G1542' => 'tar', 'TAR622G0205' => 'tar', 'TAR625G1277' => 'tar', 'TAR626G1938' => 'tar', 'THA.LOC104799225' => 'tha', 'THA.LOC104802136' => 'tha', 'THA.LOC104803826' => 'tha', 'THA.LOC104809261' => 'tha', 'THA.LOC104812491' => 'tha', 'THA.LOC104817443' => 'tha', 'THA.LOC104818859' => 'tha', 'Thecc.01G320600' => 'tca', 'Thecc.03G013400' => 'tca', 'Thecc.04G308900' => 'tca', 'Thecc.06G075600' => 'tca', 'Thecc.09G120000' => 'tca', 'Thecc.09G148400' => 'tca', 'Thhalv10001337m.g' => 'esa', 'Thhalv10003768m.g' => 'esa', 'Thhalv10005815m.g' => 'esa', 'Thhalv10007002m.g' => 'esa', 'Thhalv10018222m.g' => 'esa', 'Thhalv10020147m.g' => 'esa', 'Thhalv10024599m.g' => 'esa', 'TPR.G14252' => 'tpr', 'TPR.G15664' => 'tpr', 'TPR.G16177' => 'tpr', 'TPR.G18394' => 'tpr', 'TPR.G21339' => 'tpr', 'TPR.G22111' => 'tpr', 'TPR.G25315' => 'tpr', 'TPR.G28441' => 'tpr', 'TPR.G28442' => 'tpr', 'TPR.G28551' => 'tpr', 'TPR.G30806' => 'tpr', 'TPR.G37195' => 'tpr', 'TPR.G38618' => 'tpr', 'TPR.G38624' => 'tpr', 'TPR.G40111' => 'tpr', 'TPR.G4048' => 'tpr', 'TPR.G715' => 'tpr', 'TWI09G1224' => 'twi', 'TWI18G0141' => 'twi', 'TWI23G0197' => 'twi', 'TWI32G0769' => 'twi', 'TWI34G0502' => 'twi', 'TWI39G1120' => 'twi', 'TWI59G0157' => 'twi', 'unitig_46.g18226' => 'ugi', 'unitig_60.g25650' => 'ugi', 'unitig_60.g25651' => 'ugi', 'unitig_750.g28466' => 'ugi', 'vmacro02378' => 'vma', 'vmacro16614' => 'vma', 'VMungo0540G1446' => 'vmu', 'VMungo0647G1154' => 'vmu', 'VMungo0673G0001' => 'vmu', 'VMungo1080G1118' => 'vmu', 'VMungo1215G0212' => 'vmu', 'VMungo1309G0559' => 'vmu', 'VMungo1309G1488' => 'vmu', 'VMungo1383G1732' => 'vmu', 'Zm00001eb026390' => 'zma', 'Zm00001eb028680' => 'zma', 'Zm00001eb122660' => 'zma', 'Zm00001eb136840' => 'zma', 'Zm00001eb148970' => 'zma', 'Zm00001eb161190' => 'zma', 'Zm00001eb345700' => 'zma', 'Zm00001eb403490' => 'zma' ) $gf_id = 'HOM05D000746' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000746' ) $data_identifier = 'HOM05D000746' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 24, 'aar' => (int) 6, 'aag' => (int) 4, 'ach' => (int) 6, 'amhyb' => (int) 6, 'aly' => (int) 6, 'aox' => (int) 5, 'arhy' => (int) 25, 'ath' => (int) 7, 'atr' => (int) 3, 'acertr' => (int) 8, 'cqu' => (int) 16, 'bca' => (int) 20, 'bol' => (int) 11, 'bra' => (int) 10, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 8, 'cru' => (int) 7, 'car' => (int) 7, 'cbr' => (int) 2, 'ccan' => (int) 2, 'cde' => (int) 3, 'cfa' => (int) 6, 'ccl' => (int) 6, 'cil' => (int) 7, 'cla' => (int) 5, 'col' => (int) 5, 'cpa' => (int) 6, 'cre' => (int) 1, 'csa' => (int) 4, 'camsi' => (int) 12, 'dca' => (int) 10, 'din' => (int) 6, 'dzi' => (int) 8, 'eca' => (int) 8, 'bvu' => (int) 7, 'egr' => (int) 6, 'fan' => (int) 24, 'fve' => (int) 7, 'gma' => (int) 16, 'ghi' => (int) 24, 'gra' => (int) 14, 'vvi' => (int) 6, 'han' => (int) 14, 'cav' => (int) 5, 'hma' => (int) 3, 'vpl' => (int) 7, 'sun' => (int) 3, 'lal' => (int) 14, 'lonja' => (int) 5, 'lja' => (int) 7, 'lsa' => (int) 17, 'mes' => (int) 9, 'mpo' => (int) 2, 'mbi' => (int) 7, 'mco' => (int) 6, 'mdo' => (int) 11, 'mtr' => (int) 7, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 4, 'nta' => (int) 13, 'nnu' => (int) 12, 'oeu' => (int) 10, 'osa' => (int) 4, 'pax' => (int) 7, 'pgr' => (int) 9, 'stu' => (int) 6, 'pvu' => (int) 7, 'ptr' => (int) 10, 'ppa' => (int) 3, 'pco' => (int) 1, 'ppe' => (int) 5, 'psa' => (int) 11, 'pso' => (int) 10, 'qlo' => (int) 11, 'rch' => (int) 5, 'rsi' => (int) 3, 'sbr' => (int) 5, 'sbo' => (int) 5, 'sci' => (int) 5, 'sed' => (int) 8, 'sgi' => (int) 18, 'sas' => (int) 5, 'smo' => (int) 3, 'sly' => (int) 6, 'spe' => (int) 6, 'spa' => (int) 7, 'tar' => (int) 5, 'tha' => (int) 7, 'tca' => (int) 6, 'esa' => (int) 7, 'tpr' => (int) 17, 'twi' => (int) 7, 'ugi' => (int) 4, 'vma' => (int) 2, 'vmu' => (int) 8, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb403490' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1